SNP Profiles matching LCT EEN 90

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 1234567891011121314
_Input profile
CCGGCCTTCCCCTTGGCTTTGGCCAATT
1._LCT_EEN_90
CCGGCCTTCCCCTTGGCTTTGGCCAATT
2._RUQ_1638
_GGCCTT___GG___CCAA_
3._RUQ_1683
_GGCCTT___GG___CCAA_
4._LCT_EEN_90
CCGGCCTTCC_TTGGCTTTGGCCAATT
5._LCT_EEN_90
CCGGCCTTCC_TTGGCTTTGGCCAATT
6._LCT_EEN_90
CCGGCCTTCC_TTGGCTTTGGCCAATT
7._LCT_EEN_90
CCGGCCTTCC_TTGGCTTTGGCCAATT
8._LCT_EEN_90
CCGGCCTTCC_TTGGCTTTGGCCAATT
9._LCT_EEN_90
CCGGCCTTCC_TTGGCTTTGGCCAATT
10._LCT_EEN_90
CCGGCCTTCC_TTGGCTTTGGCCAATT
11._LCT_EEN_90
CCGGCCTTCC_TTGGCTTTGGCCAATT
12._LCT_EEN_90
CCGGCCTTCC_TTGGCTTTGGCCAATT
13._LCT_EEN_90
CCGGCCTTCC_TTGGCTTTGGCCAATT
14._GC-08-089-2-12
CCGGCCTTCC_TTGGCTTTGGCCAATT
15._GC-08-089-2-12
CCGGCCTTCC_TTGGCTTTGGCCAATT
16._GC-08-089-2-12
CCGGCCTTCC_TTGGCTTTGGCCAATT
17._GC-08-089-2-12
CCGGCCTTCC_TTGGCTTTGGCCAATT
18._GC-08-089-2-12
CCGGCCTTCC_TTGGCTTTGGCCAATT
19._GC-08-089-2-12
CCGGCCTTCC_TTGGCTTTGGCCAATT
20._GC-08-089-2-12
CCGGCCTTCC_TTGGCTTTGGCCAATT
21._GC-08-089-2-12
CCGGCCTTCC_TTGGCTTTGGCCAATT
22._GC-08-089-2-12
CCGGCCTTCC_TTGGCTTTGGCCAATT
23._GC-08-089-2-12
CCGGCCTTCC_TTGGCTTTGGCCAATT
24._POUND_10
CCGGCCTTCC_TTGGCTTTGGCCAATT
25._POUND_10
CCGGCCTTCC_TTGGCTTTGGCCAATT
26._POUND_10
CCGGCCTTCC_TTGGCTTTGGCCAATT
27._GC-05-069-2-20
CCGGCCTTCC_TTGGCTTTGGCCAATT
28._GC-05-069-2-20
CCGGCCTTCC_TTGGCTTTGGCCAATT
29._GC-05-069-2-20
CCGGCCTTCC_TTGGCTTTGGCCAATT
30._RUQ_1638
CCGGCCTTCCCCTTGGCCATGGCCAATT
31._RUQ_1638
CCGGCCTTCCCCTTGGCCATGGCCAATT
32._UF_712
CCGGCCTTCCCCTTGGCCATGGCCAATT
33._UF_712
CCGGCCTTCC_TTGGCCTTGGCCAATT
34._UF_712
CCGGCCTTCC_TTGGCCTTGGCCAATT
35._UF_712
CCGGCCTTCC_TTGGCCTTGGCCAATT
36._GC-01-089-5-06
CCGGCCTTCC_TTGGCCTTGGCCAATT
37._GC-01-089-5-06
CCGGCCTTCC_TTGGCCTTGGCCAATT
38._GC-01-089-5-06
CCGGCCTTCC_TTGGCCTTGGCCAATT
39._UF_712
CCGG_TTCC_TTGGCCTTGGCCAATT
40._GC-01-089-5-06
CCGG_TTCC_TTGGCCTTGGCCAATT
41._RUQ_1379
_GGCCTT___GT___CCAA_
42._RUQ_469
_GGCCTT___GT___CCAA_
43._UF_712
CCGGCCTTCCCCTTGGCCATGGCCAATT
 1516171819202122232425262728
_Input profile
TTGGCCTTGGGGGGCTCCGGGGCCACGG
1._LCT_EEN_90
TTGGCCTTGGGGGGCTCCGGGGCCACGG
2._RUQ_1638
___TTGGGG_CTCCGGGGCCAAGG
3._RUQ_1683
___TTGGGG_CTCCGGGGCCAAGG
4._LCT_EEN_90
TTGGCCTTGGGGAACTCCGGGGCCACGG
5._LCT_EEN_90
TTGGCCTTGGGGAACTCCGGGGCCACGG
6._LCT_EEN_90
TTGGCCTTGGGGAACTCCGGGGCCACGG
7._LCT_EEN_90
TTGGCCTTGGGGAACTCCGGGGCCACGG
8._LCT_EEN_90
TTGGCCTTGGGGAACTCCGGGGCCACGG
9._LCT_EEN_90
TTGGCCTTGGGGAACTCCGGGGCCACGG
10._LCT_EEN_90
TTGGCCTTGGGGAACTCCGGGGCCACGG
11._LCT_EEN_90
TTGGCCTTGGGGAACTCCGGGGCCACGG
12._LCT_EEN_90
TTGGCCTTGGGGAACTCCGGGGCCACGG
13._LCT_EEN_90
TTGGCCTTGGGGAACTCCGGGGCCACGG
14._GC-08-089-2-12
TTGGCCTTGGGGAACTCCGGGGCCACGG
15._GC-08-089-2-12
TTGGCCTTGGGGAACTCCGGGGCCACGG
16._GC-08-089-2-12
TTGGCCTTGGGGAACTCCGGGGCCACGG
17._GC-08-089-2-12
TTGGCCTTGGGGAACTCCGGGGCCACGG
18._GC-08-089-2-12
TTGGCCTTGGGGAACTCCGGGGCCACGG
19._GC-08-089-2-12
TTGGCCTTGGGGAACTCCGGGGCCACGG
20._GC-08-089-2-12
TTGGCCTTGGGGAACTCCGGGGCCACGG
21._GC-08-089-2-12
TTGGCCTTGGGGAACTCCGGGGCCACGG
22._GC-08-089-2-12
TTGGCCTTGGGGAACTCCGGGGCCACGG
23._GC-08-089-2-12
TTGGCCTTGGGGAACTCCGGGGCCACGG
24._POUND_10
TTGGCCTTGGGGAACTCCGGGGCCACGG
25._POUND_10
TTGGCCTTGGGGAACTCCGGGGCCACGG
26._POUND_10
TTGGCCTTGGGGAACTCCGGGGCCACGG
27._GC-05-069-2-20
TTGGCCTTGGGGAACTCCGGGGCCACGG
28._GC-05-069-2-20
TTGGCCTTGGGGAACTCCGGGGCCACGG
29._GC-05-069-2-20
TTGGCCTTGGGGAACTCCGGGGCCACGG
30._RUQ_1638
TTGGCCTTGGGGGGCTCCGGGGCCAAGG
31._RUQ_1638
TTGGCCTTGGGGGGCTCCGGGGCCAAGG
32._UF_712
TT_CCTTGGGGGGCTCCGGGGCCAAGG
33._UF_712
TTGGCCTTGGGGAACTCCGGGGCCAAGG
34._UF_712
TTGGCCTTGGGGAACTCCGGGGCCAAGG
35._UF_712
TTGGCCTTGGGGAACTCCGGGGCCAAGG
36._GC-01-089-5-06
TTGGCCTTGGGGAACTCCGGGGCCAAGG
37._GC-01-089-5-06
TTGGCCTTGGGGAACTCCGGGGCCAAGG
38._GC-01-089-5-06
TTGGCCTTGGGGAACTCCGGGGCCAAGG
39._UF_712
TTGGCCTTGGGGAACTCCGGGGCCAAGG
40._GC-01-089-5-06
TTGGCCTTGGGGAACTCCGGGGCCAAGG
41._RUQ_1379
___TTGGGG_CTCCGGGTCCAAGG
42._RUQ_469
___TTGGGG_CTCCGGGTCCAAGG
43._UF_712
TT_CCTTGGGGGGCTTTGGGGCCAAGG
 29303132333435363738    
_Input profile
AATTCCAACCTTGGCCAACCX_XX_XX_XX_X
1._LCT_EEN_90
AATTCCAACCTTGGCCAACCX_XX_XX_XX_X
2._RUQ_1638
_TTCCAACCTTGGCC__X_XX_XX_XX_X
3._RUQ_1683
_TTCCAACCTTGGCC__X_XX_XX_XX_X
4._LCT_EEN_90
AATTCCAACCTTGGCCAACCX_XX_XX_XX_X
5._LCT_EEN_90
AATTCCAACCTTGGCCAACCX_XX_XX_XX_X
6._LCT_EEN_90
AATTCCAACCTTGGCCAACCX_XX_XX_XX_X
7._LCT_EEN_90
AATTCCAACCTTGGCCAACCX_XX_XX_XX_X
8._LCT_EEN_90
AATTCCAACCTTGGCCAACCX_XX_XX_XX_X
9._LCT_EEN_90
AATTCCAACCTTGGCCAACCX_XX_XX_XX_X
10._LCT_EEN_90
AATTCCAACCTTGGCCAACCX_XX_XX_XX_X
11._LCT_EEN_90
AATTCCAACCTTGGCCAACCX_XX_XX_XX_X
12._LCT_EEN_90
AATTCCAACCTTGGCCAACCX_XX_XX_XX_X
13._LCT_EEN_90
AATTCCAACCTTGGCCAACCX_XX_XX_XX_X
14._GC-08-089-2-12
AATTCCAACCTTGGCCAACCX_XX_XX_XX_X
15._GC-08-089-2-12
AATTCCAACCTTGGCCAACCX_XX_XX_XX_X
16._GC-08-089-2-12
AATTCCAACCTTGGCCAACCX_XX_XX_XX_X
17._GC-08-089-2-12
AATTCCAACCTTGGCCAACCX_XX_XX_XX_X
18._GC-08-089-2-12
AATTCCAACCTTGGCCAACCX_XX_XX_XX_X
19._GC-08-089-2-12
AATTCCAACCTTGGCCAACCX_XX_XX_XX_X
20._GC-08-089-2-12
AATTCCAACCTTGGCCAACCX_XX_XX_XX_X
21._GC-08-089-2-12
AATTCCAACCTTGGCCAACCX_XX_XX_XX_X
22._GC-08-089-2-12
AATTCCAACCTTGGCCAACCX_XX_XX_XX_X
23._GC-08-089-2-12
AATTCCAACCTTGGCCAACCX_XX_XX_XX_X
24._POUND_10
AATTCCAACCTTGGCCAACCX_XX_XX_XX_X
25._POUND_10
AATTCCAACCTTGGCCAACCX_XX_XX_XX_X
26._POUND_10
AATTCCAACCTTGGCCAACCX_XX_XX_XX_X
27._GC-05-069-2-20
AATTCCAACCTTGGCCAACCX_XX_XX_XX_X
28._GC-05-069-2-20
AATTCCAACCTTGGCCAACCX_XX_XX_XX_X
29._GC-05-069-2-20
AATTCCAACCTTGGCCAACCX_XX_XX_XX_X
30._RUQ_1638
AATTCCAACCTTGGCCAACCX_XX_XX_XX_X
31._RUQ_1638
AATTCCAACCTTGGCCAACCX_XX_XX_XX_X
32._UF_712
AATTCCAACCTTGGCCAACCX_XX_XX_XX_X
33._UF_712
AATTCCAACCTTGGCCAACCX_XX_XX_XX_X
34._UF_712
AATTCCAACCTTGGCCAACCX_XX_XX_XX_X
35._UF_712
AATTCCAACCTTGGCCAACCX_XX_XX_XX_X
36._GC-01-089-5-06
AATTCCAACCTTGGCCAACCX_XX_XX_XX_X
37._GC-01-089-5-06
AATTCCAACCTTGGCCAACCX_XX_XX_XX_X
38._GC-01-089-5-06
AATTCCAACCTTGGCCAACCX_XX_XX_XX_X
39._UF_712
AATTCCAACCTTGGCCAACCX_XX_XX_XX_X
40._GC-01-089-5-06
AATTCCAACCTTGGCCAACCX_XX_XX_XX_X
41._RUQ_1379
_TTCCAACCTTGGCC__X_XX_XX_XX_X
42._RUQ_469
_TTCCAACCTTGGCC__X_XX_XX_XX_X
43._UF_712
AATTCC_CCTTGGCCAACCX_XX_XX_XX_X

Input profile: LCT_EEN_90

 
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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 143 T3
 Dapeng Zhang, 2016

1._LCT_EEN_90

identical
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 143 T3
 Dapeng Zhang, 2014

2._UF_712 RUQ_1638

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._UF_712 RUQ_1683

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._LCT_EEN_90

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 4 > FP
 Dapeng Zhang, 2016

5._LCT_EEN_90

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 3 > FP
 Dapeng Zhang, 2016

6._LCT_EEN_90

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 2 > FP
 Dapeng Zhang, 2016

7._LCT_EEN_90

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 1 > FP
 Dapeng Zhang, 2016

8._LCT_EEN_90

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 10
 Dapeng Zhang, 2016

9._LCT_EEN_90

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 9
 Dapeng Zhang, 2016

10._LCT_EEN_90

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 8
 Dapeng Zhang, 2016

11._LCT_EEN_90

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 7
 Dapeng Zhang, 2016

12._LCT_EEN_90

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 6
 Dapeng Zhang, 2016

13._LCT_EEN_90

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 5
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

14._LCT_EEN_90 GC-08-089-2-12

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

15._LCT_EEN_90 GC-08-089-2-12

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

16._LCT_EEN_90 GC-08-089-2-12

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

17._LCT_EEN_90 GC-08-089-2-12

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

18._LCT_EEN_90 GC-08-089-2-12

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

19._LCT_EEN_90 GC-08-089-2-12

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

20._LCT_EEN_90 GC-08-089-2-12

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

21._LCT_EEN_90 GC-08-089-2-12

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

22._LCT_EEN_90 GC-08-089-2-12

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

23._LCT_EEN_90 GC-08-089-2-12

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

24._POUND_10

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5220 3
 Dapeng Zhang, 2016

25._POUND_10

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5220 1 > FP
 Dapeng Zhang, 2016

26._POUND_10

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5220 4 > FP
 Dapeng Zhang, 2016

27._POUND_10 GC-05-069-2-20

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

28._POUND_10 GC-05-069-2-20

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

29._POUND_10 GC-05-069-2-20

97.3 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

30._UF_712 RUQ_1638

96.1 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

31._UF_712 RUQ_1638

96.1 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

32._UF_712

95.9 %
37 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

33._UF_712

94.6 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1506 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

34._UF_712

94.6 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1506 2
 Dapeng Zhang, 2016

35._UF_712

94.6 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1506 4
 Dapeng Zhang, 2016

36._UF_712 GC-01-089-5-06

94.6 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

37._UF_712 GC-01-089-5-06

94.6 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

38._UF_712 GC-01-089-5-06

94.6 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

39._UF_712

94.4 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1506 3
 Dapeng Zhang, 2016

40._UF_712 GC-01-089-5-06

94.4 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

41._AM_1_/57_[POU] RUQ_1379

93.5 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

42._AM_1_/8_[POU] RUQ_469

93.5 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

43._UF_712

93.1 %
36 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: La Montaña Lot 6 Row 39 34_36
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP193 34TcSNP151 35TcSNP150
36TcSNP144 37TcSNP32 38TcSNP25